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mrirecon / bart

BART: Toolbox for Computational Magnetic Resonance Imaging
https://mrirecon.github.io/bart/
BSD 3-Clause "New" or "Revised" License
290 stars 161 forks source link

make error: fatal error: lapacke.h: #330

Closed ryao-mdanderson closed 2 weeks ago

ryao-mdanderson commented 2 weeks ago

Dear Bart developer:

I am an HPC system administrator for the institute research cluster. I am assisting a scientist to set up bart on our system, a RHEL 8.7 cluster.

I did the following steps:

1, git clone https://github.com/mrirecon/bart

2,Per README, our system has met the requirements,

Required in README: “To install the required libraries on Redhat / Centos run: $ sudo yum install atlas-devel fftw3-devel libpng-devel lapack-devel”

On our system, the packages are installed to meet the requirement: $ rpm -qa | grep atlas atlas-3.10.3-8.el8.x86_64 atlas-devel-3.10.3-8.el8.x86_64

$ rpm -qa | grep lapack-devel lapack-devel-3.8.0-8.el8.x86_64

$ rpm -qa | grep fftw fftw-libs-single-3.3.5-11.el8.x86_64 fftw-libs-quad-3.3.5-11.el8.x86_64 fftw-devel-3.3.5-11.el8.x86_64 fftw-libs-3.3.5-11.el8.x86_64 fftw-libs-double-3.3.5-11.el8.x86_64 fftw2-2.1.5-40.el8.x86_64 fftw-static-3.3.5-11.el8.x86_64 fftw-libs-long-3.3.5-11.el8.x86_64 fftw-3.3.5-11.el8.x86_64

$ rpm -qa | grep libpng libpng15-1.5.30-7.el8.x86_64 libpng-1.6.34-5.el8.x86_64 libpng-devel-1.6.34-5.el8.x86_64

“The minimum GCC supported is 11.” We use gcc version 11.3.0

However, the ‘make’ command hit an error: $ cd /tmp/bart/ $ make … /tmp/bart/src/num/lapack.c:21:10: fatal error: lapacke.h: No such file or directory 21 | #include | ^~~ compilation terminated. make: *** [Makefile:824: /tmp/bart/src/num/lapack.o] Error 1

I located lapacka.h on the system $ locate lapacke.h /usr/include/lapacke/lapacke.h /usr/include/openblas/lapacke.h /usr/share/man/man3/lapacke.h.3.gz

Please advise if I overlooked anything. Thank you very much for your help, Rong Yao

uecker commented 2 weeks ago

Dear Rong, I replied to your email here (but also CCed) https://lists.eecs.berkeley.edu/sympa/arc/mrirecon/2024-07/msg00008.html

You could also try this (even though this is for a different problem) https://lists.eecs.berkeley.edu/sympa/arc/mrirecon/2024-07/msg00014.html

Best, Martin

ryao-mdanderson commented 2 weeks ago

Hello Martin,

Thank you! I just find your reply in my email box. Appreciate! I have follow up questions in my reply.

Best, Rong

uecker commented 2 weeks ago

Close as discussed elsewhere.