mrirecon / bart

BART: Toolbox for Computational Magnetic Resonance Imaging
https://mrirecon.github.io/bart/
BSD 3-Clause "New" or "Revised" License
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twixread cannot read Siemens data - Input/output error #339

Closed VasudevDevulapally closed 2 months ago

VasudevDevulapally commented 2 months ago

Dear all,

I am trying to Siemens data file and i an incurring input/output error when i use twixread for reading .dat files for siemens. Kindly let me know the reason for this error

bart twixread -A meas_MID00080_FID04407_XTE_gmPETRA_TE-0.01.dat /mnt/nicshare/Skull_Imaging_VD/VD_Skull_Imaging_Test/Acquisition_files/July/raw_data_July_22_2024/ VD Header. MeasID: 80 FileID: 4407 Scans: 2 Patient: xxxxxxxxxxxxxxxxxxxxxxxxxxxx Protocol: XTE_gmPETRA_TE-0.01 VD Header. MeasID: 80 FileID: 4407 Scans: 2 Patient: xxxxxxxxxxxxxxxxxxxxxxxxxxxx Protocol: XTE_gmPETRA_TE-0.01 WARN: Wrong number of samples: 1 != 0. WARN: Stopping.

bart twixread -A meas_MID00077_FID04404_AdjCoilSens.dat /mnt/nicshare//Skull_Imaging_VD/VD_Skull_Imaging_Test/Acquisition_files/July/raw_data_July_22_2024/ VD Header. MeasID: 77 FileID: 4404 Scans: 1 Patient: xxxxxxxxxxxxxxxxxxxxxxxxxxxx Protocol: AdjCoilSens VD Header. MeasID: 77 FileID: 4404 Scans: 1 Patient: xxxxxxxxxxxxxxxxxxxxxxxxxxxx Protocol: AdjCoilSens shared cfl /mnt/nicshare /Skull_Imaging_VD/VD_Skull_Imaging_Test/Acquisition_files/July/raw_data_July_22_2024/.cfl : Input/output error](url)

uecker commented 2 months ago

Please do not use the issue tracker for help. There is a mailing list.

It seems though you provide an output directly, but you not to specify an output file. The error message might also indicate that the automatic mode does not understand your data. In this case it may help to specify the dimensions manually. Alternatively, there is matlab code you can find on the internet which may help reading your data (mapVBVD.m).