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mritchielab / FLAMES

A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
https://mritchielab.github.io/FLAMES/
GNU General Public License v3.0
21 stars 9 forks source link

Building vignette during package installation failure #2

Closed PeteHaitch closed 3 years ago

PeteHaitch commented 3 years ago 
> BiocManager::install("OliverVoogd/FlamesR", build_vignettes = TRUE, force = TRUE)
Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.0 (2020-04-24)
Installing github package(s) 'OliverVoogd/FlamesR'
Using github PAT from envvar GITHUB_PAT
Downloading GitHub repo OliverVoogd/FlamesR@HEAD
✓  checking for file ‘/tmp/RtmpVvsgBm/remotes410456a20059/OliverVoogd-FlamesR-34fac81/DESCRIPTION’ (683ms)
─  preparing ‘FLAMES’:
✓  checking DESCRIPTION meta-information ...
─  cleaning src
─  installing the package to build vignettes (559ms)
E  creating vignettes (4m 21.6s)
   --- re-building ‘windows_FLAMES_pipeline.Rmd’ using rmarkdown
   PREFIX=/home/peter/.cache/basilisk/1.2.1/0
   Unpacking payload ...

     0%|          | 0/35 [00:00<?, ?it/s]
   Extracting : tk-8.6.8-hbc83047_0.conda:   0%|          | 0/35 [00:00<?, ?it/s]
   Extracting : tk-8.6.8-hbc83047_0.conda:   3%|▎         | 1/35 [00:00<00:06,  5.66it/s]
   Extracting : ruamel_yaml-0.15.87-py37h7b6447c_0.conda:   3%|▎         | 1/35 [00:00<00:06,  5.66it/s]
   Extracting : certifi-2020.4.5.1-py37_0.conda:   6%|▌         | 2/35 [00:00<00:05,  5.66it/s]         
   Extracting : cryptography-2.9.2-py37h1ba5d50_0.conda:   9%|▊         | 3/35 [00:00<00:05,  5.66it/s]
   Extracting : chardet-3.0.4-py37_1003.conda:  11%|█▏        | 4/35 [00:00<00:05,  5.66it/s]          
   Extracting : yaml-0.1.7-had09818_2.conda:  14%|█▍        | 5/35 [00:00<00:05,  5.66it/s]  
   Extracting : wheel-0.34.2-py37_0.conda:  17%|█▋        | 6/35 [00:00<00:05,  5.66it/s]  
   Extracting : libgcc-ng-9.1.0-hdf63c60_0.conda:  20%|██        | 7/35 [00:00<00:04,  5.66it/s]
   Extracting : libgcc-ng-9.1.0-hdf63c60_0.conda:  23%|██▎       | 8/35 [00:00<00:03,  7.78it/s]
   Extracting : pysocks-1.7.1-py37_0.conda:  23%|██▎       | 8/35 [00:00<00:03,  7.78it/s]      
   Extracting : idna-2.9-py_1.conda:  26%|██▌       | 9/35 [00:00<00:03,  7.78it/s]       
   Extracting : python-3.7.7-hcff3b4d_5.conda:  29%|██▊       | 10/35 [00:01<00:03,  7.78it/s]
   Extracting : python-3.7.7-hcff3b4d_5.conda:  31%|███▏      | 11/35 [00:01<00:04,  5.63it/s]
   Extracting : libstdcxx-ng-9.1.0-hdf63c60_0.conda:  31%|███▏      | 11/35 [00:01<00:04,  5.63it/s]
   Extracting : pycosat-0.6.3-py37h7b6447c_0.conda:  34%|███▍      | 12/35 [00:01<00:04,  5.63it/s] 
   Extracting : setuptools-46.4.0-py37_0.conda:  37%|███▋      | 13/35 [00:01<00:03,  5.63it/s]    
   Extracting : readline-8.0-h7b6447c_0.conda:  40%|████      | 14/35 [00:01<00:03,  5.63it/s] 
   Extracting : libedit-3.1.20181209-hc058e9b_0.conda:  43%|████▎     | 15/35 [00:01<00:03,  5.63it/s]
   Extracting : tqdm-4.46.0-py_0.conda:  46%|████▌     | 16/35 [00:01<00:03,  5.63it/s]               
   Extracting : conda-package-handling-1.6.1-py37h7b6447c_0.conda:  49%|████▊     | 17/35 [00:01<00:03,  5.63it/s]
   Extracting : ld_impl_linux-64-2.33.1-h53a641e_7.conda:  51%|█████▏    | 18/35 [00:01<00:03,  5.63it/s]         
   Extracting : cffi-1.14.0-py37he30daa8_1.conda:  54%|█████▍    | 19/35 [00:01<00:02,  5.63it/s]        
   Extracting : zlib-1.2.11-h7b6447c_3.conda:  57%|█████▋    | 20/35 [00:01<00:02,  5.63it/s]    
   Extracting : libffi-3.3-he6710b0_1.conda:  60%|██████    | 21/35 [00:01<00:02,  5.63it/s] 
   Extracting : pyopenssl-19.1.0-py37_0.conda:  63%|██████▎   | 22/35 [00:01<00:02,  5.63it/s]
   Extracting : sqlite-3.31.1-h62c20be_1.conda:  66%|██████▌   | 23/35 [00:01<00:02,  5.63it/s]
   Extracting : pycparser-2.20-py_0.conda:  69%|██████▊   | 24/35 [00:01<00:01,  5.63it/s]     
   Extracting : urllib3-1.25.8-py37_0.conda:  71%|███████▏  | 25/35 [00:01<00:01,  5.63it/s]
   Extracting : _libgcc_mutex-0.1-main.conda:  74%|███████▍  | 26/35 [00:01<00:01,  5.63it/s]
   Extracting : pip-20.0.2-py37_3.conda:  77%|███████▋  | 27/35 [00:01<00:01,  5.63it/s]     
   Extracting : xz-5.2.5-h7b6447c_0.conda:  80%|████████  | 28/35 [00:01<00:01,  5.63it/s]
   Extracting : ca-certificates-2020.1.1-0.conda:  83%|████████▎ | 29/35 [00:01<00:01,  5.63it/s]
   Extracting : requests-2.23.0-py37_0.conda:  86%|████████▌ | 30/35 [00:01<00:00,  5.63it/s]    
   Extracting : six-1.14.0-py37_0.conda:  89%|████████▊ | 31/35 [00:01<00:00,  5.63it/s]     
   Extracting : ncurses-6.2-he6710b0_1.conda:  91%|█████████▏| 32/35 [00:01<00:00,  5.63it/s]
   Extracting : openssl-1.1.1g-h7b6447c_0.conda:  94%|█████████▍| 33/35 [00:01<00:00,  5.63it/s]
   Extracting : conda-4.8.3-py37_0.tar.bz2:  97%|█████████▋| 34/35 [00:01<00:00,  5.63it/s]     
   Extracting : conda-4.8.3-py37_0.tar.bz2: 100%|██████████| 35/35 [00:01<00:00,  7.57it/s]

   Collecting package metadata (current_repodata.json): ...working... done
   Solving environment: ...working... done

   ## Package Plan ##

     environment location: /home/peter/.cache/basilisk/1.2.1/0

     added / updated specs:
       - _libgcc_mutex==0.1=main
       - ca-certificates==2020.1.1=0
       - certifi==2020.4.5.1=py37_0
       - cffi==1.14.0=py37he30daa8_1
       - chardet==3.0.4=py37_1003
       - conda-package-handling==1.6.1=py37h7b6447c_0
       - conda==4.8.3=py37_0
       - cryptography==2.9.2=py37h1ba5d50_0
       - idna==2.9=py_1
       - ld_impl_linux-64==2.33.1=h53a641e_7
       - libedit==3.1.20181209=hc058e9b_0
       - libffi==3.3=he6710b0_1
       - libgcc-ng==9.1.0=hdf63c60_0
       - libstdcxx-ng==9.1.0=hdf63c60_0
       - ncurses==6.2=he6710b0_1
       - openssl==1.1.1g=h7b6447c_0
       - pip==20.0.2=py37_3
       - pycosat==0.6.3=py37h7b6447c_0
       - pycparser==2.20=py_0
       - pyopenssl==19.1.0=py37_0
       - pysocks==1.7.1=py37_0
       - python==3.7.7=hcff3b4d_5
       - readline==8.0=h7b6447c_0
       - requests==2.23.0=py37_0
       - ruamel_yaml==0.15.87=py37h7b6447c_0
       - setuptools==46.4.0=py37_0
       - six==1.14.0=py37_0
       - sqlite==3.31.1=h62c20be_1
       - tk==8.6.8=hbc83047_0
       - tqdm==4.46.0=py_0
       - urllib3==1.25.8=py37_0
       - wheel==0.34.2=py37_0
       - xz==5.2.5=h7b6447c_0
       - yaml==0.1.7=had09818_2
       - zlib==1.2.11=h7b6447c_3

   The following NEW packages will be INSTALLED:

     _libgcc_mutex      pkgs/main/linux-64::_libgcc_mutex-0.1-main
     ca-certificates    pkgs/main/linux-64::ca-certificates-2020.1.1-0
     certifi            pkgs/main/linux-64::certifi-2020.4.5.1-py37_0
     cffi               pkgs/main/linux-64::cffi-1.14.0-py37he30daa8_1
     chardet            pkgs/main/linux-64::chardet-3.0.4-py37_1003
     conda              pkgs/main/linux-64::conda-4.8.3-py37_0
     conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.6.1-py37h7b6447c_0
     cryptography       pkgs/main/linux-64::cryptography-2.9.2-py37h1ba5d50_0
     idna               pkgs/main/noarch::idna-2.9-py_1
     ld_impl_linux-64   pkgs/main/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
     libedit            pkgs/main/linux-64::libedit-3.1.20181209-hc058e9b_0
     libffi             pkgs/main/linux-64::libffi-3.3-he6710b0_1
     libgcc-ng          pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
     libstdcxx-ng       pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
     ncurses            pkgs/main/linux-64::ncurses-6.2-he6710b0_1
     openssl            pkgs/main/linux-64::openssl-1.1.1g-h7b6447c_0
     pip                pkgs/main/linux-64::pip-20.0.2-py37_3
     pycosat            pkgs/main/linux-64::pycosat-0.6.3-py37h7b6447c_0
     pycparser          pkgs/main/noarch::pycparser-2.20-py_0
     pyopenssl          pkgs/main/linux-64::pyopenssl-19.1.0-py37_0
     pysocks            pkgs/main/linux-64::pysocks-1.7.1-py37_0
     python             pkgs/main/linux-64::python-3.7.7-hcff3b4d_5
     readline           pkgs/main/linux-64::readline-8.0-h7b6447c_0
     requests           pkgs/main/linux-64::requests-2.23.0-py37_0
     ruamel_yaml        pkgs/main/linux-64::ruamel_yaml-0.15.87-py37h7b6447c_0
     setuptools         pkgs/main/linux-64::setuptools-46.4.0-py37_0
     six                pkgs/main/linux-64::six-1.14.0-py37_0
     sqlite             pkgs/main/linux-64::sqlite-3.31.1-h62c20be_1
     tk                 pkgs/main/linux-64::tk-8.6.8-hbc83047_0
     tqdm               pkgs/main/noarch::tqdm-4.46.0-py_0
     urllib3            pkgs/main/linux-64::urllib3-1.25.8-py37_0
     wheel              pkgs/main/linux-64::wheel-0.34.2-py37_0
     xz                 pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
     yaml               pkgs/main/linux-64::yaml-0.1.7-had09818_2
     zlib               pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3

   Preparing transaction: ...working... done
   Executing transaction: ...working... done
   installation finished.
   Collecting package metadata (current_repodata.json): ...working... done
   Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... done

   ## Package Plan ##

     environment location: /home/peter/.cache/basilisk/1.2.1/FLAMES-0.99.0/full_env

     added / updated specs:
       - python=2.7.15

   The following packages will be downloaded:

       package                    |            build
       ---------------------------|-----------------
       _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
       _openmp_mutex-4.5          |            1_gnu          22 KB  conda-forge
       ca-certificates-2020.12.5  |       ha878542_0         137 KB  conda-forge
       certifi-2019.11.28         |   py27h8c360ce_1         149 KB  conda-forge
       ld_impl_linux-64-2.35.1    |       hea4e1c9_2         618 KB  conda-forge
       libffi-3.2.1               |    he1b5a44_1007          47 KB  conda-forge
       libgcc-ng-9.3.0            |      h2828fa1_18         7.8 MB  conda-forge
       libgomp-9.3.0              |      h2828fa1_18         376 KB  conda-forge
       libstdcxx-ng-9.3.0         |      h6de172a_18         4.0 MB  conda-forge
       ncurses-6.2                |       h58526e2_4         985 KB  conda-forge
       openssl-1.1.1j             |       h7f98852_0         2.1 MB  conda-forge
       pip-20.1.1                 |     pyh9f0ad1d_0         1.1 MB  conda-forge
       python-2.7.15              |h5a48372_1011_cpython        12.2 MB  conda-forge
       python_abi-2.7             |         1_cp27mu           4 KB  conda-forge
       readline-8.0               |       he28a2e2_2         281 KB  conda-forge
       setuptools-44.0.0          |           py27_0         663 KB  conda-forge
       sqlite-3.35.2              |       h74cdb3f_0         1.4 MB  conda-forge
       tk-8.6.10                  |       h21135ba_1         3.2 MB  conda-forge
       wheel-0.36.2               |     pyhd3deb0d_0          31 KB  conda-forge
       zlib-1.2.11                |    h516909a_1010         106 KB  conda-forge
       ------------------------------------------------------------
                                              Total:        35.2 MB

   The following NEW packages will be INSTALLED:

     _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
     _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
     ca-certificates    conda-forge/linux-64::ca-certificates-2020.12.5-ha878542_0
     certifi            conda-forge/linux-64::certifi-2019.11.28-py27h8c360ce_1
     ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.35.1-hea4e1c9_2
     libffi             conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
     libgcc-ng          conda-forge/linux-64::libgcc-ng-9.3.0-h2828fa1_18
     libgomp            conda-forge/linux-64::libgomp-9.3.0-h2828fa1_18
     libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-9.3.0-h6de172a_18
     ncurses            conda-forge/linux-64::ncurses-6.2-h58526e2_4
     openssl            conda-forge/linux-64::openssl-1.1.1j-h7f98852_0
     pip                conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
     python             conda-forge/linux-64::python-2.7.15-h5a48372_1011_cpython
     python_abi         conda-forge/linux-64::python_abi-2.7-1_cp27mu
     readline           conda-forge/linux-64::readline-8.0-he28a2e2_2
     setuptools         conda-forge/linux-64::setuptools-44.0.0-py27_0
     sqlite             conda-forge/linux-64::sqlite-3.35.2-h74cdb3f_0
     tk                 conda-forge/linux-64::tk-8.6.10-h21135ba_1
     wheel              conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0
     zlib               conda-forge/linux-64::zlib-1.2.11-h516909a_1010

   Downloading and Extracting Packages

   libgcc-ng-9.3.0      | 7.8 MB    |            |   0% 
   libgcc-ng-9.3.0      | 7.8 MB    | ##1        |  21% 
   libgcc-ng-9.3.0      | 7.8 MB    | #####2     |  52% 
   libgcc-ng-9.3.0      | 7.8 MB    | ######6    |  66% 
   libgcc-ng-9.3.0      | 7.8 MB    | ########## | 100% 

   sqlite-3.35.2        | 1.4 MB    |            |   0% 
   sqlite-3.35.2        | 1.4 MB    | ########## | 100% 

   tk-8.6.10            | 3.2 MB    |            |   0% 
   tk-8.6.10            | 3.2 MB    | ########## | 100% 

   pip-20.1.1           | 1.1 MB    |            |   0% 
   pip-20.1.1           | 1.1 MB    | ########## | 100% 

   setuptools-44.0.0    | 663 KB    |            |   0% 
   setuptools-44.0.0    | 663 KB    | ########## | 100% 

   readline-8.0         | 281 KB    |            |   0% 
   readline-8.0         | 281 KB    | ########## | 100% 

   zlib-1.2.11          | 106 KB    |            |   0% 
   zlib-1.2.11          | 106 KB    | ########## | 100% 

   wheel-0.36.2         | 31 KB     |            |   0% 
   wheel-0.36.2         | 31 KB     | ########## | 100% 

   ca-certificates-2020 | 137 KB    |            |   0% 
   ca-certificates-2020 | 137 KB    | ########## | 100% 

   python-2.7.15        | 12.2 MB   |            |   0% 
   python-2.7.15        | 12.2 MB   |            |   0% 
   python-2.7.15        | 12.2 MB   | #1         |  11% 
   python-2.7.15        | 12.2 MB   | #5         |  16% 
   python-2.7.15        | 12.2 MB   | ##6        |  27% 
   python-2.7.15        | 12.2 MB   | ###2       |  32% 
   python-2.7.15        | 12.2 MB   | ####2      |  43% 
   python-2.7.15        | 12.2 MB   | ####9      |  50% 
   python-2.7.15        | 12.2 MB   | #####6     |  56% 
   python-2.7.15        | 12.2 MB   | ######2    |  62% 
   python-2.7.15        | 12.2 MB   | #######5   |  76% 
   python-2.7.15        | 12.2 MB   | ########3  |  83% 
   python-2.7.15        | 12.2 MB   | #########2 |  93% 
   python-2.7.15        | 12.2 MB   | ########## | 100% 

   libgomp-9.3.0        | 376 KB    |            |   0% 
   libgomp-9.3.0        | 376 KB    | ########## | 100% 

   ld_impl_linux-64-2.3 | 618 KB    |            |   0% 
   ld_impl_linux-64-2.3 | 618 KB    | ########## | 100% 

   python_abi-2.7       | 4 KB      |            |   0% 
   python_abi-2.7       | 4 KB      | ########## | 100% 

   openssl-1.1.1j       | 2.1 MB    |            |   0% 
   openssl-1.1.1j       | 2.1 MB    | ########## | 100% 

   ncurses-6.2          | 985 KB    |            |   0% 
   ncurses-6.2          | 985 KB    | ########## | 100% 

   _openmp_mutex-4.5    | 22 KB     |            |   0% 
   _openmp_mutex-4.5    | 22 KB     | ########## | 100% 

   certifi-2019.11.28   | 149 KB    |            |   0% 
   certifi-2019.11.28   | 149 KB    | ########## | 100% 

   _libgcc_mutex-0.1    | 3 KB      |            |   0% 
   _libgcc_mutex-0.1    | 3 KB      | ########## | 100% 

   libstdcxx-ng-9.3.0   | 4.0 MB    |            |   0% 
   libstdcxx-ng-9.3.0   | 4.0 MB    | ########1  |  82% 
   libstdcxx-ng-9.3.0   | 4.0 MB    | ########## | 100% 

   libffi-3.2.1         | 47 KB     |            |   0% 
   libffi-3.2.1         | 47 KB     | ########## | 100% 
   Preparing transaction: ...working... done
   Verifying transaction: ...working... done
   Executing transaction: ...working... done

   ==> WARNING: A newer version of conda exists. <==
     current version: 4.8.3
     latest version: 4.9.2

   Please update conda by running

       $ conda update -n base -c defaults conda

   #
   # To activate this environment, use
   #
   #     $ conda activate /home/peter/.cache/basilisk/1.2.1/FLAMES-0.99.0/full_env
   #
   # To deactivate an active environment, use
   #
   #     $ conda deactivate

   Collecting package metadata (current_repodata.json): ...working... done
   Solving environment: ...working... done

   ==> WARNING: A newer version of conda exists. <==
     current version: 4.8.3
     latest version: 4.9.2

   Please update conda by running

       $ conda update -n base -c defaults conda

   # All requested packages already installed.

   Collecting package metadata (current_repodata.json): ...working... done
   Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.

   PackagesNotFoundError: The following packages are not available from current channels:

     - libgfortran=5.0.0

   Current channels:

     - https://conda.anaconda.org/bioconda/linux-64
     - https://conda.anaconda.org/bioconda/noarch
     - https://conda.anaconda.org/conda-forge/linux-64
     - https://conda.anaconda.org/conda-forge/noarch
     - https://repo.anaconda.com/pkgs/main/linux-64
     - https://repo.anaconda.com/pkgs/main/noarch
     - https://repo.anaconda.com/pkgs/r/linux-64
     - https://repo.anaconda.com/pkgs/r/noarch

   To search for alternate channels that may provide the conda package you're
   looking for, navigate to

       https://anaconda.org

   and use the search bar at the top of the page.

   Quitting from lines 104-112 (windows_FLAMES_pipeline.Rmd) 
   Error: processing vignette 'windows_FLAMES_pipeline.Rmd' failed with diagnostics:
   one or more Python packages failed to install [error code 1]
   --- failed re-building ‘windows_FLAMES_pipeline.Rmd’

   SUMMARY: processing the following file failed:
     ‘windows_FLAMES_pipeline.Rmd’

   Error: Vignette re-building failed.
   Execution halted
Error: Failed to install 'FLAMES' from GitHub:
  System command 'R' failed, exit status: 1, stdout + stderr (last 10 lines):
E> Quitting from lines 104-112 (windows_FLAMES_pipeline.Rmd) 
E> Error: processing vignette 'windows_FLAMES_pipeline.Rmd' failed with diagnostics:
E> one or more Python packages failed to install [error code 1]
E> --- failed re-building ‘windows_FLAMES_pipeline.Rmd’
E> 
E> SUMMARY: processing the following file failed:
E>   ‘windows_FLAMES_pipeline.Rmd’
E> 
E> Error: Vignette re-building failed.
E> Execution halted

Session info

> sessionInfo()
R version 4.0.0 (2020-04-24)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS

Matrix products: default
BLAS/LAPACK: /opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64_lin/libmkl_rt.so

locale:
 [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C               LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8    
 [5] LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8    LC_PAPER=en_AU.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocManager_1.30.10 repete_0.0.0.9011   devtools_2.3.2      usethis_2.0.1      

loaded via a namespace (and not attached):
 [1] xfun_0.22              remotes_2.2.0          purrr_0.3.4            colorspace_2.0-0      
 [5] testthat_3.0.2         htmltools_0.5.1.1      stats4_4.0.0           yaml_2.2.1            
 [9] rlang_0.4.10           pkgbuild_1.2.0         glue_1.4.2             withr_2.4.1           
[13] BiocGenerics_0.36.0    pryr_0.1.4             sessioninfo_1.1.1      fortunes_1.5-4        
[17] GenomeInfoDbData_1.2.4 lifecycle_1.0.0        stringr_1.4.0          zlibbioc_1.36.0       
[21] munsell_0.5.0          codetools_0.2-18       memoise_2.0.0          evaluate_0.14         
[25] knitr_1.31             callr_3.5.1            IRanges_2.24.1         fastmap_1.1.0         
[29] ps_1.6.0               GenomeInfoDb_1.26.4    curl_4.3               parallel_4.0.0        
[33] Rcpp_1.0.6             scales_1.1.1           cachem_1.0.4           S4Vectors_0.28.1      
[37] desc_1.3.0             pkgload_1.2.0          lobstr_1.1.1           XVector_0.30.0        
[41] fs_1.5.0               digest_0.6.27          stringi_1.5.3          processx_3.4.5        
[45] GenomicRanges_1.42.0   rprojroot_2.0.2        cli_2.3.1              tools_4.0.0           
[49] bitops_1.0-6           magrittr_2.0.1         RCurl_1.98-1.3         crayon_1.4.1          
[53] ellipsis_0.3.1         prettyunits_1.1.1      rstudioapi_0.13        assertthat_0.2.1      
[57] rmarkdown_2.7          R6_2.5.0               compiler_4.0.0
OliverVoogd commented 3 years ago

FLAMES no longer requires libgfortran===5.0.0, which isn't available on Linux systems, instead requiring libgfortran==3.0.0 or greater, which is available on all systems.