Update cutadapt.R to fix broken cutadapt syntax

mritchielab / FLAMES

A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.

https://mritchielab.github.io/FLAMES/

GNU General Public License v3.0

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Closed felixradtke closed 7 months ago

felixradtke commented 7 months ago

Fix for cutadapt code execution.

Current version of cutadapt output generation does not concatenate cutadapt commands appropriately leading to a broken pipe. PR fixes this.