Default parameter sets for various read sizes and single vs. PE

mrmckain / Fast-Plast

Automated de novo assembly of whole chloroplast genomes.

MIT License

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Closed mrmckain closed 7 years ago

mrmckain commented 8 years ago

Identify size of reads and adjust parameters accordingly.

Allow for single for paired end options.

mrmckain commented 7 years ago

Done. Fast-Plast handles PE, SE, or a combination. Adjusts kmer sizes based on reads.