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mrmckain / Fast-Plast

Automated de novo assembly of whole chloroplast genomes.
MIT License
43 stars 14 forks source link

Patching fast-plast.pl to handle multistream compressed gzip files #17

Closed molecules closed 6 years ago

molecules commented 6 years ago

MultiStream => 1 makes IO::Uncompress::Gunzip behave the same (as far as decompression goes) as gunzip itself would. I ran into this issue before with FASTQ files (see https://stackoverflow.com/questions/41045834/iouncompressgunzip-stops-after-first-original-gzipped-file-inside-concate).

I also fixed the shebang and added use warnings, since -w doesn't work anymore in the shebang line.

mrmckain commented 6 years ago

Thanks for the fixes, Chris.

molecules commented 6 years ago

You’re welcome! Thank you for all of your work creating and maintaining Fast Plast!