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mrmckain / Fast-Plast

Automated de novo assembly of whole chloroplast genomes.
MIT License
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Directory issues #31

Closed mariamariamaria123 closed 5 years ago

mariamariamaria123 commented 5 years ago

This is the error I get when I run the program:

Can't exec "/nv/hp16/mahmad42/ncbi-blast-2.2.29+/bin/blastn/makeblastdb": Not a directory at /nv/hp16/mahmad42/filefile/Fast-Plast-master/fast-plast.pl line 1692. sh: /nv/hp16/mahmad42/ncbi-blast-2.2.29+/bin/blastnblastn: No such file or directory Can't exec "/nv/hp16/mahmad42/ncbi-blast-2.2.29+/bin/blastn/makeblastdb": Not a directory at /nv/hp16/mahmad42/filefile/Fast-Plast-master/fast-plast.pl line 1409, <$cpdbgenes> line 26526. sh: /nv/hp16/mahmad42/ncbi-blast-2.2.29+/bin/blastnblastn: No such file or directory Died at /nv/hp16/mahmad42/filefile/Fast-Plast-master/fast-plast.pl line 876.

It appears it cannot find a certain directory? Is this an issue in the fast-plast.pl script?

mrmckain commented 5 years ago

Sorry for the delay. I missed these issues.

This appears to be an issue in where Fast-Plast is being told BLAST is. Can you check the beginning of the fastplast.pl file to make sure things are set properly?

Best, Michael