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mrmckain / Fast-Plast

Automated de novo assembly of whole chloroplast genomes.
MIT License
43 stars 14 forks source link

Afin installation #34

Closed carol-siniscalchi closed 5 years ago

carol-siniscalchi commented 5 years ago

Hey Mike,

I'm trying to run Fast-Plast in a ubuntu machine and I'm getting the following error when installing Afin:

carol@jmandel-OptiPlex-7010:~/Fast-Plast/afin$ make g++ -std=c++11 -g -pthread -c afin.cpp -o afin.o cc1plus: error: unrecognized command line option ‘-std=c++11’ make: *** [afin.o] Error 1

The automatic installation using the INSTALL script also failed. I have zlib installed.

Do you know what might be causing it? I tried to run some files and it stops right after the Spades step.

Thanks!

mrmckain commented 5 years ago

Do you have a c++11 supported c++ compiler? For example, we use gcc5.4.0.

mrmckain commented 5 years ago

Is it in your path?