mrmckain / Fast-Plast

Automated de novo assembly of whole chloroplast genomes.
MIT License
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FAILED (exit code 255) #38

Open matiaskohler opened 4 years ago

matiaskohler commented 4 years ago

Hey you all, Let me know if some of you can help me to fix this.

I had this report pasted below in my error.log. Should be some installation issue?

Error: NCBI C++ Exception: T0 "/home/coremake/release_build/build/PrepareRelease_Linux64-Centos_JSID_01_350334_130.14.22.10_9008__PrepareRelease_Linux64-Centos_1481139955/c++/compilers/unix/../../src/objtools/blast/seqdb_writer/build_db.cpp", line 1021: Error: BLASTDB::ncbi::s_CreateDirectories() - You do not have write permissions on 'bin'

sh: /apps/gcc/5.2.0/fast-plast/1.2.6/bin/ncbi-blast-2.6.0+/binblastn: No such file or directory Error: NCBI C++ Exception: T0 "/home/coremake/release_build/build/PrepareRelease_Linux64-Centos_JSID_01_350334_130.14.22.10_9008__PrepareRelease_Linux64-Centos_1481139955/c++/compilers/unix/../../src/objtools/blast/seqdb_writer/build_db.cpp", line 1021: Error: BLASTDB::ncbi::s_CreateDirectories() - You do not have write permissions on 'bin'

sh: /apps/gcc/5.2.0/fast-plast/1.2.6/bin/ncbi-blast-2.6.0+/binblastn: No such file or directory sh: /apps/gcc/5.2.0/fast-plast/1.2.6/bin/ncbi-blast-2.6.0+/binblastn: No such file or directory sh: /apps/gcc/5.2.0/fast-plast/1.2.6/bin/ncbi-blast-2.6.0+/binblastn: No such file or directory sh: /apps/gcc/5.2.0/fast-plast/1.2.6/bin/ncbi-blast-2.6.0+/binblastn: No such file or directory Error: NCBI C++ Exception: T0 "/home/coremake/release_build/build/PrepareRelease_Linux64-Centos_JSID_01_350334_130.14.22.10_9008__PrepareRelease_Linux64-Centos_1481139955/c++/compilers/unix/../../src/objtools/blast/seqdb_writer/build_db.cpp", line 1021: Error: BLASTDB::ncbi::s_CreateDirectories() - You do not have write permissions on 'bin'

sh: /apps/gcc/5.2.0/fast-plast/1.2.6/bin/ncbi-blast-2.6.0+/binblastn: No such file or directory Died at /apps/gcc/5.2.0/fast-plast/1.2.6/fast-plast.pl line 834.

mrmckain commented 4 years ago

Hello,

Blast is not available for Fast-Plast to use because of permissions. You will need to check where you are installing to make sure it is somewhere you can write to.

Best, Michael