unknown issue with spades

mrmckain / Fast-Plast

Automated de novo assembly of whole chloroplast genomes.

MIT License

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Open Jorge-82 opened 11 months ago

Jorge-82 commented 11 months ago

While running Fast-Plast the run stops with a spades-related issue. Any suggestion to fix the issue? thanks!

Use of uninitialized value $total_length in division (/) at /home/jorge/Fast-Plast/bin/filter_spades_contigs_weigthed.pl line 36.

Use of uninitialized value $accumulated_coverage in division (/) at /home/jorge/Fast-Plast/bin/filter_spades_contigs_weigthed.pl line 36.

mrmckain commented 10 months ago

Hi Jorge,

Please sent the logs for out and error.

For this error, there is not a spades assembly being passed to these scripts. It could be at multiple levels, so I need the full logs/error/out.

Best, Michael