Fast plast fails with user defined bowtie2 indices

mrmckain / Fast-Plast

Automated de novo assembly of whole chloroplast genomes.

MIT License

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Fast plast fails with user defined bowtie2 indices #63

Open Homap opened 5 months ago

Homap commented 5 months ago

Hello,

I am running Fast-plast with my own index generated by Bowtie2 however, the mapping fails. I used bowtie2-build to produce the index files for my fasta file. Is there anything else I should do before being able to use them with Fast-plast?

Thanks so much in advance, Homa