No 5_Plastome_Finishing, Coverage_Analysis, Final_Assembly folders appear.

mrmckain / Fast-Plast

Automated de novo assembly of whole chloroplast genomes.

MIT License

44 stars 13 forks source link

No 5_Plastome_Finishing, Coverage_Analysis, Final_Assembly folders appear. #65

Open xhx-1 opened 2 months ago

xhx-1 commented 2 months ago

Hi, I'm having some problems with this. No folders 5_Plastome_Finishing, Coverage_Analysis, and Final_Assembly appear, so I can't see the results of the assembly. C2-try_Fast-Plast_Progress.log C2-try_results_error.log C2-try_results_out.log

mrmckain commented 2 months ago

Hi-- Sorry for the delay in response. Based on what I am seeing with your data, I suspect that the high coverage is causing an issue--as strange as that may sound! Try subsampling your data to about 1 million reads and see if it improves.

Best, Michael