mroosmalen / nanosv

SV caller for nanopore data
MIT License
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Creating BED file problems #78

Closed martika1997 closed 1 year ago

martika1997 commented 1 year ago

Hello, I tried to run your python code on my PC so I can see what the result be like (for banana genome). But I have problems with

simple_repeats_file = '/hpc/cog_bioinf/kloosterman/users/mroosmalen/data/simpleRepeats.bed' gaps_file = '/hpc/cog_bioinf/kloosterman/users/mroosmalen/data/gap.bed'

What does those files look like?