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mrunalimanj / modelingSystemsinBiology

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antibody design + pyRosetta (structural biology exploration) #4

Open mrunalimanj opened 3 years ago

mrunalimanj commented 3 years ago

consider combining structural biology with antibody design: https://www.bu.edu/computationalimmunology/files/2018/06/AntibodyStructure2018SummerSchool.pdf

seems to be a subset of the problem.

mrunalimanj commented 3 years ago

https://github.com/pb3lab/ibm3202 is a great suite of protein folding + function notebooks we can try to use as a starting point! might also be a good mix to the antibody design stuff..?

mrunalimanj commented 3 years ago

in addition to the pyRosetta notebooks, these seem to be a helpful resource: https://github.com/pb3lab/ibm3202 an overview: https://pubs.acs.org/doi/10.1021/acs.jchemed.1c00022

edit: oh lol I already added it. why did I make a whole new issue then...