What are the real dependencies for this software

mrvollger / SDA

Segmental Duplication Assembler (SDA).

MIT License

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What are the real dependencies for this software #21

Closed foriin closed 1 year ago

foriin commented 2 years ago

Hi, I'm having a trouble understanding why there are 'module' commands in env_sda.sh, though you wrote that there is only requirement for SDA, that is anaconda. I don't have it installed, nor etc/profile.d.modules.sh file. Do I have to install Modules? What other software prerequisites should be there? Could you possibly clear this out?

mrvollger commented 1 year ago

SDA is no longer maintained and should not be used. SDA was designed for low quality PacBio (CLR) and ONT long reads, both of which are now substantially higher quality allowing standard assembly tools like Flye, HiCanu, and hifiasm to outperform any results previously possible with SDA. We have added this information to the top of the README and I apologize for not noting this sooner.