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mrvollger / SDA

Segmental Duplication Assembler (SDA).
MIT License
44 stars 6 forks source link

Question on readToSNVList #23

Closed Lqh09 closed 1 year ago

Lqh09 commented 1 year ago

Hi,

I attempted to find the "readToSNVList" file in the "externalRepos/pbgreedyphase/" directory. Do you have any idea where I can find the "readToSNVList" file?

Thank you! Iris

mrvollger commented 1 year ago

SDA is no longer maintained and should not be used. SDA was designed for low quality PacBio (CLR) and ONT long reads, both of which are now substantially higher quality allowing standard assembly tools like Flye, HiCanu, and hifiasm to outperform any results previously possible with SDA. We have added this information to the top of the README and I apologize for not noting this sooner.