Clarification for the `mm_f` config parameter

[taprs]

Hi Mitchell,

thank you for the amazing tool!

The description for the mm_f config parameter probably needs to be updated. In both versions of minimap2 I can instantly access the -f option only accepts floats:

minimap2 -V
# 2.20-r1061

minimap2 --help
# ...
# -f FLOAT     filter out top FLOAT fraction of repetitive minimizers [0.0002]

What parameter of the new minimap2 corresponds to the mm_f parameter?

[mrvollger]

The help page is incomplete and the man page has the full description:

https://lh3.github.io/minimap2/minimap2.html

Also note this pipeline forces minimap2 v2.18.

Best, Mitchell

[taprs]

Got it, thanks!