[INFO] The sequence will be split into 4 batches.
Assuming unrestricted shared filesystem usage.
Building DAG of jobs...
/usr/bin/bash: conda: command not found
Traceback (most recent call last):
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/cli.py", line 2068, in args_to_api
dag_api.execute_workflow(
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/api.py", line 589, in execute_workflow
workflow.execute(
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/workflow.py", line 1122, in execute
self.dag.create_conda_envs()
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/dag.py", line 420, in create_conda_envs
env.create(self.workflow.dryrun)
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/deployment/conda.py", line 393, in create
pin_file = self.pin_file
^^^^^^^^^^^^^
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake_interface_common/utils.py", line 33, in __get__
value = self.method(instance)
^^^^^^^^^^^^^^^^^^^^^
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/deployment/conda.py", line 103, in pin_file
f".{self.conda.platform}.pin.txt"
^^^^^^^^^^
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake_interface_common/utils.py", line 33, in __get__
value = self.method(instance)
^^^^^^^^^^^^^^^^^^^^^
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/deployment/conda.py", line 96, in conda
return Conda(
^^^^^^
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/deployment/conda.py", line 655, in __init__
shell.check_output(self._get_cmd("conda info --json"), text=True)
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/site-packages/snakemake/shell.py", line 61, in check_output
return sp.check_output(cmd, shell=True, executable=executable, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/subprocess.py", line 466, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/dan/miniconda3/envs/snakemake/lib/python3.12/subprocess.py", line 571, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command 'conda info --json' returned non-zero exit status 127.
Hello:
How should I solve this problem? Thanks a lot