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mrvollger / minimiro

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Miropeats error with the module.sh file #4

Open Rafaelsoler13 opened 1 year ago

Rafaelsoler13 commented 1 year ago

Hello @mrvollger

I am trying to use miropeats for the visualization of 2 sequence alignment. However, I am struggling with some problems.

I am trying to run the miropeats.rmk, but it gives me this error:

~/minimiro/env.cfg: line 3: module: command not found cat: /etc/redhat-release: No such file or directory CentOS Release: Unknown ~/minimiro/env.cfg: line 13: /etc/profile.d/modules.sh: No such file or directory

I cannot find the module.sh file. How can I solve this problem?

Thank you so much for the tool :+1:

mrvollger commented 1 year ago

This pipeline was setup to work with the local module system but you could modify or clear the lines in workflow/env.cfg and make sure you have all those tools to installed in your current environment.

I'd like to switch these to conda dependancies so it works for others but as always time is limiting. If you get it working with conda and want to make a PR those are always welcome!

Rafaelsoler13 commented 1 year ago

What should I do in the env.cfg file? Sorry I am not an expert. Should I delete all the lines in cfg? Or specific ones?

Thanks!