ms609 / Quartet

R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)
https://ms609.github.io/Quartet/
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`VisualizeQuartet()` return value #65

Closed ms609 closed 7 months ago

ms609 commented 7 months ago

per request from JS

github-actions[bot] commented 7 months ago

RcppDeepState Report

function name message file line address trace R code
tqdist_QuartetAgreementEdge 40 bytes in 1 blocks are possibly lost in loss record 19 of 1,353 RootedTreeFactory.cpp:10 No Address Trace found
Test code
testlist <- list(edge1 = structure(c(54L, 12L, 90L, 70L, 91L, 97L), .Dim = 3:2),     edge2 = structure(c(76L, NA, 71L, 4L, 17L, 43L, 43L, 7L,     90L, 95L, 15L, 91L, 54L, NA, 4L, NA, 8L, 1878425011L, 16L,     24L, 16L), .Dim = c(3L, 7L)))
result <- do.call(Quartet:::tqdist_QuartetAgreementEdge, testlist)

Analyzed functions summary

function name tested inputs inputs with issues
all_quartets 3 0
tqdist_AllPairsQuartetAgreement 3 0
tqdist_AllPairsQuartetAgreementChar 3 0
tqdist_AllPairsQuartetDistance 3 0
tqdist_AllPairsQuartetDistanceChar 3 0
tqdist_AllPairsTripletDistance 3 0
tqdist_OneToManyQuartetAgreement 3 0
tqdist_OneToManyQuartetAgreementChar 3 0
tqdist_PairsQuartetDistance 3 0
tqdist_PairsTripletDistance 3 0
tqdist_QuartetAgreement 3 0
tqdist_QuartetAgreementChar 3 0
tqdist_QuartetAgreementEdge 3 3
tqdist_QuartetDistance 3 0
tqdist_TripletDistance 3 0
which_index 3 0

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