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ms609 / TreeDist

Calculate distances between phylogenetic trees in R
https://ms609.github.io/TreeDist/
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Calculating adjusted R2 values from ClusteringInfoDistance() after randomization? #65

Closed Jigyasa3 closed 1 year ago

Jigyasa3 commented 3 years ago

Hey @ms609

Following up on the issue44, I am interested in calculating the goodness of fit and adjusted R2 value for ClusteringInfoDistance() value from a given pair of host and symbiont trees after 100,000 randomizations.

Any suggestion if it's possible?

ms609 commented 3 years ago

Hi, I'm afraid I'm not quite sure that I understand your question: what distribution would you be testing fit against, and what variables would you be regressing?

Cheers,

Martin

ms609 commented 1 year ago

Closing this issue as I never understood quite what was being asked. Feel free to re-open if you are able to elaborate on the comment.