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ms609
/
TreeTools
Create, modify and analyse phylogenetic trees in R
https://ms609.github.io/TreeTools/
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Binary decomposition of additive characters
#165
ms609
closed
2 months ago
1
Update to Bootstrap 5
#164
ms609
opened
2 months ago
0
v1.12.0
#163
ms609
closed
3 months ago
1
TopologyOnly()
#162
ms609
closed
3 months ago
1
Optimise `MatchNodes()`
#161
ms609
opened
3 months ago
0
Robust, Universal tree balance
#160
ms609
closed
4 months ago
0
Use log factorials to allow TCI to be calculated for larger trees
#159
ms609
closed
4 months ago
0
TCIContext(tree)$maximum overflow
#158
RussellGarwood
closed
4 months ago
3
Root tree on random edge
#157
ms609
closed
7 months ago
1
Replace `.C` with `.Call`
#156
ms609
closed
7 months ago
1
Remove `ape_node_depth`
#155
ms609
closed
7 months ago
0
tree$node.label support
#154
ms609
closed
7 months ago
1
DescendantEdges → C++
#153
ms609
closed
7 months ago
1
Subtree() handles node labels
#152
ms609
closed
7 months ago
1
Node numbers in `CollapseNode()`
#151
ms609
closed
7 months ago
0
Handle node labels in `AddTip()`
#150
ms609
closed
7 months ago
0
If tree has defined node.labels AddTips() will not change them
#149
stitam
closed
7 months ago
2
str method for relevant classes
#148
ms609
closed
7 months ago
1
Simulation of Birth-Death trees
#147
ms609
opened
8 months ago
0
YuleTree()
#146
ms609
closed
8 months ago
1
Random Trees don't match balance
#145
ms609
closed
7 months ago
1
DropTip will not remove tip on tree
#144
theo-allnutt-bioinformatics
closed
1 year ago
2
Will not install on Rstudio
#143
theo-allnutt-bioinformatics
closed
1 year ago
2
as.TreeNumber not identifying unique topologies
#142
jblandis
closed
7 months ago
4
Error: This many leaves cannot be supported
#141
noranekonobokkusu
opened
1 year ago
13
Custom directory for caching
#140
stitam
closed
1 year ago
3
using WriteTNTcharacters() with continuous matrix
#139
jc17659
closed
1 year ago
5
Read MrBayes trees
#138
ms609
closed
1 year ago
0
Tip timed tree
#137
ms609
closed
1 year ago
0
Replace `.C` with `.Call`
#136
ms609
closed
7 months ago
0
as.matrix
#135
ms609
closed
1 year ago
1
GH Actions templates
#134
ms609
opened
2 years ago
0
Unsupported NEXUS file
#133
EJchemoiwa
closed
1 year ago
1
check for na values
#132
ms609
closed
1 year ago
4
Support `ttags` in TNT trees
#131
ms609
closed
2 years ago
2
Consensus of many trees
#130
ms609
closed
2 years ago
1
demo()
#129
ms609
closed
1 year ago
1
Quality of a dataset
#128
ms609
opened
2 years ago
0
Multiline TNT
#126
ms609
closed
2 years ago
1
NexusTokens() shiny interaction
#125
ms609
closed
2 years ago
0
v1.7.2: Lapse Preorder
#124
ms609
closed
2 years ago
1
Tree balance index
#123
ms609
opened
2 years ago
0
R implementation of `ClusterTable` class
#122
ms609
closed
2 years ago
1
`as.MixedBase()` hangs (in `sort.multiPhylo()`)
#121
ms609
closed
2 years ago
0
`ClusterTable` memory requirements
#127
ms609
closed
2 years ago
0
Edge length issues
#120
ms609
closed
2 years ago
1
v1.7.0
#119
ms609
closed
2 years ago
1
C++ split manipulation
#118
ms609
closed
2 years ago
1
`MSTEdges()` fails gracefully on bad input
#117
ms609
closed
2 years ago
0
Rdpack nobrackets
#116
ms609
closed
2 years ago
1
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