Update clinical breakpoints and fix some `as.mo()` bugs

msberends / AMR

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

https://msberends.github.io/AMR/

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Update clinical breakpoints and fix some `as.mo()` bugs #117

Closed msberends closed 1 year ago

msberends commented 1 year ago

To Do:

[x] make ECOFFs work by adding the functional part to as.sir_method
[ ] add new version numbering for the HORRIBLE new versions of EUCAST expert rules (e.g., Enterobacterales has v3.2 but date January 2023, while the older Enterobacterales also has v3.2 but date June 2019 on the website and October 2021 in its PDF file; it's a mess)

erwinhassing commented 1 year ago

as.mo / mo_name functions gives error:

as.mo_test("stau") Error: node stack overflow Error during wrapup: node stack overflow Error: no more error handlers available (recursive errors?); invoking 'abort' restart