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msberends / AMR

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
https://msberends.github.io/AMR/
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Not all mo_transforms work with antibiogram #148

Closed andrewjmc closed 4 months ago

andrewjmc commented 4 months ago

I think line 297 of antibiogram.r should read

x$`.mo` <- mo_property(x$`.mo`, property=mo_transform, language = language)

rather than

x$`.mo` <- mo_property(x$`.mo`, language = language)

Currently transforms are not supported other than those hardcoded!

Thanks,

Andrew

msberends commented 4 months ago

My goodness! You’re absolutely right!! I’ll fix it right away today, thanks so much for letting know!