Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
as.mo("Neisseria mucosa sicca")
#> ℹ Microorganism translation was uncertain for "Neisseria mucosa sicca" (assumed Neisseria elongata glycolytica).
#> Run mo_uncertainties() to review this, or use add_custom_microorganisms() to add custom entries.
#> Class 'mo'
#> [1] B_NESSR_ELNG_GLYC
Instead, you'd expect this:
as.mo("Neisseria mucosa sicca")
#> ℹ Microorganism translation was uncertain for "Neisseria mucosa sicca" (assumed Neisseria mucosa).
#> Run mo_uncertainties() to review this, or use add_custom_microorganisms() to add custom entries.
#> Class 'mo'
#> [1] B_NESSR_MUCS
Thus, if a subspecies is not in our microorganisms table, prefer the species over some exotic try to find something.
Now, this happens:
Instead, you'd expect this:
Thus, if a subspecies is not in our
microorganisms
table, prefer the species over some exotic try to find something.