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msberends / AMR

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
https://msberends.github.io/AMR/
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Support for CLSI 2020 and 2021 #38

Closed msberends closed 3 years ago

msberends commented 3 years ago

From an email:

Dear Dr. Berends,

I would like to know if is possible to get a new version of AMR package for R with CLSI 2020 or 2021. In the current version of AMR package, CLSI it is given only until 2019, and EUCAST until 2021. It is a great package, congratulations!!

So, I hope you can help me with the question, or if you could provide a suggestion/hint to use CLSI 2021 would be really nice.

Thank you very much for your time and understanding.

This is indeed a good idea, we’ll start working on it!

msberends commented 3 years ago

(this is an automated reply)

The development version nows contains the fix to this issue. You can try the latest version yourself using:

install.packages("remotes") # if you haven't already
remotes::install_github("msberends/AMR")
msberends commented 3 years ago

Unfortunately, CLSI 2021 is not yet available in the publicly available WHONET software, from which we derive the CLSI interpretation values. We’ve added CLSI 2020 now.

msberends commented 3 years ago

Fix released to official R repository

Just a small notice: we released a new software version, containing the fix to this issue. Please update your version using either the user interface of your software, or by running:

install.packages("AMR")