Add Trypanosomatidae (parasitic agents)

msberends / AMR

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

https://msberends.github.io/AMR/

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Add Trypanosomatidae (parasitic agents) #51

Closed msberends closed 1 year ago

msberends commented 2 years ago

Such as Leishmania, check which ones are missing. Have to be added from Catalogue of Life (not LPSN, since not bacterial).

msberends commented 2 years ago

Unfeasible, only source I could find is IRMNG, e.g., for Leishmania here: http://www.irmng.org/aphia.php?p=taxdetails&id=1041732. Only genera, while we'd like species level as well.

New goal is to add all Trypanosomatidae to the species level.

msberends commented 2 years ago

Catalogue of Life (CoL): https://www.catalogueoflife.org/data/search?TAXON_ID=62742&facet=rank&facet=issue&facet=status&facet=nomStatus&facet=nameType&facet=field&facet=authorship&facet=extinct&facet=environment&limit=50&offset=0&rank=genus&status=accepted

Global Biodiversity Information Facility (GBIF): https://www.gbif.org/species/6009069

Interim Register of Marine and Nonmarine Genera (IRMNG): https://www.irmng.org/aphia.php?p=taxdetails&id=113212

msberends commented 1 year ago

Fixed in #71