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msberends / AMR

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.
https://msberends.github.io/AMR/
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Add `mo_pathogenicity()` #92

Closed msberends closed 1 year ago

msberends commented 1 year ago

Since we now have #90, add this function!

mo_pathogenicity() must return one of ”established”, “putative”, “unknown”.

And refer to the 2022 paper.

msberends commented 1 year ago

Now in latest beta