mschubert clustermq issues

mschubert / clustermq

R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH

https://mschubert.github.io/clustermq/

Apache License 2.0

145 stars 26 forks source link

issues

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clustermq jobs stall when using Seurat::ScaleData

#332 nick-youngblut opened 5 days ago
6
seurat v5 => Error in [[<-.data.frame(*tmp*, field, value = new("Seurat", assays = list(: replacement has 5000 rows, data has 1

#331 nick-youngblut closed 5 days ago
2
When using clustermq in a foreach, data.table loses their data.table class although is.data.table returns TRUE in workers

#330 neovom opened 3 months ago
0
Increase flexibility of network port mapping in clustermq

#329 michaelmayer2 closed 3 months ago
1
Specify ports used by zeromq

#328 dankessler closed 3 months ago
2
Outdated ZeroMQ on system trumps bundled version(?)

#327 HenrikBengtsson opened 4 months ago
3
Error in qsys$cleanup() : argument "success" is missing, with no default

#326 weizhu365 closed 4 months ago
2
clustermq 0.9.3 worker stats NA?

#325 luwidmer closed 4 months ago
3
0.9.0+ crashing on AWS parallel cluster with slurm & several hundred cores

#324 kkmann closed 6 months ago
6
Cleanup issues

#323 mschubert closed 6 months ago
0
`max_calls_worker` argument is not functional

#322 mschubert closed 7 months ago
0
recv() hangs on Mac OS

#321 wlandau closed 7 months ago
3
Running multiple jobs on SLURM scheduler through SSH

#320 wardfont closed 7 months ago
3
jobs won't run from R Jupyter notebooks in VS Code, for SGE

#319 atyakhtmpg closed 6 months ago
3
new feature making clustermq "pipeable"

#318 wds15 opened 8 months ago
4
clustermq was removed from CRAN?

#317 luwidmer closed 7 months ago
3
ENH: Add skip conditions to unit tests

#316 mfansler closed 7 months ago
3
Update Makevars.win

#315 jeroen closed 8 months ago
1
Windows: update zeromq libs + arm64 support

#312 jeroen closed 9 months ago
9
Simple receive hangs on macOS

#311 mschubert closed 8 months ago
23
Error in w$poll() : Unexpected peer disconnect

#310 raphaelbetschart closed 9 months ago
4
Can't register backend after upgrading to 0.9.0

#309 bhayete-empress closed 7 months ago
3
Q() segfaults on Windows & Linux with multiprocess scheduler with clustermq 0.9.0

#308 luwidmer closed 9 months ago
8
Repeatedly calling Q() in clustermq 0.9.0 leads to "job not found" messages

#307 luwidmer closed 6 months ago
6
Receiving data after shutting down workers results in a segfault

#306 wlandau closed 9 months ago
9
Local processing reports errors only after all calls complete

#305 mschubert opened 10 months ago
1
Error/warning summary does not prioritize correctly

#304 mschubert closed 10 months ago
0
`v0.9.0` backwards compatibility

#303 mschubert closed 10 months ago
14
Trouble using clustermq as the backend for BiocParallel

#302 bhayete-empress closed 6 months ago
6
workaround context termination segfault by not sharing via XPtr

#300 mschubert closed 1 year ago
0
Update SGE.tmpl

#299 nickholway closed 1 year ago
1
Memory options missing from SGE template

#298 nickholway closed 1 year ago
3
Expose run time as an option whilst submitting a function

#297 nickholway closed 1 year ago
3
cannot customize ports in ssh options

#296 weizhu365 closed 6 months ago
4
Segfault with purrr 1.0.0

#295 wlandau closed 1 year ago
2
More user friendly timeouts

#293 multimeric closed 1 year ago
1
Add "smp" to the "-pe" line in SGE.tmpl

#289 wlandau closed 1 year ago
0
SGE submission fails due to invalid parallel environment in default template

#288 nickholway closed 1 year ago
7
common data warning message

#287 wlandau closed 1 year ago
0
some progress with future.clustermq

#282 michaelmayer2 closed 2 years ago
2
Nonstandard R path via SSH

#281 mschubert closed 2 years ago
3
targets stalls using the worker API with the multiprocess backend

#278 mschubert closed 2 years ago
1
SGE template: defaulting to user R path?

#277 nick-youngblut closed 2 years ago
7
Question about the R session on the worker

#276 ImNotaGit closed 2 years ago
2
Is it confusing to call ssh a clustermq scheduler?

#273 mattwarkentin closed 1 year ago
0
Q_rows fails with log_worker=F

#272 dleopold closed 2 years ago
2
Clustermq 0.8.96 fails with error on `foreach ... %dopar% ...` in Jupyter lab R console/notebooks

#271 efremale closed 6 months ago
2
Job port is set to NA after binding failure

#270 statquant closed 1 year ago
11
Warning in sprintf(log_file, i): one argument not used by format '|'

#269 wlandau closed 2 years ago
3
Fix support for ucrt compilers

#268 jeroen closed 3 years ago
2