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mschubert
/
clustermq
R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
https://mschubert.github.io/clustermq/
Apache License 2.0
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Common data sending may be fully parallel
#334
mschubert
opened
2 weeks ago
0
Accidental data sending via closures
#333
mschubert
opened
2 weeks ago
0
clustermq jobs stall when using Seurat::ScaleData
#332
nick-youngblut
closed
2 months ago
9
seurat v5 => Error in [[<-.data.frame(*tmp*, field, value = new("Seurat", assays = list(: replacement has 5000 rows, data has 1
#331
nick-youngblut
closed
3 months ago
2
`[.data.table`(i) subsets columns instead of rows when called via `foreach`
#330
neovom
closed
1 month ago
4
Increase flexibility of network port mapping in clustermq
#329
michaelmayer2
closed
6 months ago
1
Specify ports used by zeromq
#328
dankessler
closed
6 months ago
2
Outdated ZeroMQ on system trumps bundled version(?)
#327
HenrikBengtsson
closed
1 month ago
3
Error in qsys$cleanup() : argument "success" is missing, with no default
#326
weizhu365
closed
7 months ago
2
clustermq 0.9.3 worker stats NA?
#325
luwidmer
closed
7 months ago
3
0.9.0+ crashing on AWS parallel cluster with slurm & several hundred cores
#324
kkmann
closed
9 months ago
6
Cleanup issues
#323
mschubert
closed
10 months ago
0
`max_calls_worker` argument is not functional
#322
mschubert
closed
10 months ago
0
recv() hangs on Mac OS
#321
wlandau
closed
10 months ago
3
Running multiple jobs on SLURM scheduler through SSH
#320
wardfont
closed
10 months ago
3
jobs won't run from R Jupyter notebooks in VS Code, for SGE
#319
atyakhtmpg
closed
10 months ago
3
new feature making clustermq "pipeable"
#318
wds15
opened
11 months ago
4
clustermq was removed from CRAN?
#317
luwidmer
closed
10 months ago
3
ENH: Add skip conditions to unit tests
#316
mfansler
closed
10 months ago
3
Update Makevars.win
#315
jeroen
closed
1 year ago
1
Windows: update zeromq libs + arm64 support
#312
jeroen
closed
1 year ago
9
Simple receive hangs on macOS
#311
mschubert
closed
12 months ago
23
Error in w$poll() : Unexpected peer disconnect
#310
raphaelbetschart
closed
1 year ago
4
Can't register backend after upgrading to 0.9.0
#309
bhayete-empress
closed
10 months ago
3
Q() segfaults on Windows & Linux with multiprocess scheduler with clustermq 0.9.0
#308
luwidmer
closed
1 year ago
8
Repeatedly calling Q() in clustermq 0.9.0 leads to "job not found" messages
#307
luwidmer
closed
10 months ago
6
Receiving data after shutting down workers results in a segfault
#306
wlandau
closed
1 year ago
9
Local processing reports errors only after all calls complete
#305
mschubert
opened
1 year ago
1
Error/warning summary does not prioritize correctly
#304
mschubert
closed
1 year ago
0
`v0.9.0` backwards compatibility
#303
mschubert
closed
1 year ago
14
Trouble using clustermq as the backend for BiocParallel
#302
bhayete-empress
closed
10 months ago
6
workaround context termination segfault by not sharing via XPtr
#300
mschubert
closed
1 year ago
0
Update SGE.tmpl
#299
nickholway
closed
1 year ago
1
Memory options missing from SGE template
#298
nickholway
closed
1 year ago
3
Expose run time as an option whilst submitting a function
#297
nickholway
closed
1 year ago
3
cannot customize ports in ssh options
#296
weizhu365
closed
10 months ago
4
Segfault with purrr 1.0.0
#295
wlandau
closed
1 year ago
2
More user friendly timeouts
#293
multimeric
closed
1 year ago
1
Add "smp" to the "-pe" line in SGE.tmpl
#289
wlandau
closed
2 years ago
0
SGE submission fails due to invalid parallel environment in default template
#288
nickholway
closed
2 years ago
7
common data warning message
#287
wlandau
closed
1 year ago
0
some progress with future.clustermq
#282
michaelmayer2
closed
2 years ago
2
Nonstandard R path via SSH
#281
mschubert
closed
2 years ago
3
targets stalls using the worker API with the multiprocess backend
#278
mschubert
closed
2 years ago
1
SGE template: defaulting to user R path?
#277
nick-youngblut
closed
2 years ago
7
Question about the R session on the worker
#276
ImNotaGit
closed
2 years ago
2
Is it confusing to call ssh a clustermq scheduler?
#273
mattwarkentin
closed
1 year ago
0
Q_rows fails with log_worker=F
#272
dleopold
closed
3 years ago
2
Clustermq 0.8.96 fails with error on `foreach ... %dopar% ...` in Jupyter lab R console/notebooks
#271
efremale
closed
10 months ago
2
Job port is set to NA after binding failure
#270
statquant
closed
1 year ago
11
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