Open happykhan opened 11 years ago
Scott doesn't like (or didnt like) megablast scoring parameters, now used by default in BLAST+'s blastn.
He may ask the option to override this with legacy blast's scoring parameters.
i.e.
blastn -task blastn. -db... -query -outfmt etc.
rather than blastn -task megablast. -db... -query -outfmt etc. (default)
Scott doesn't like (or didnt like) megablast scoring parameters, now used by default in BLAST+'s blastn.
He may ask the option to override this with legacy blast's scoring parameters.
i.e.
blastn -task blastn. -db... -query -outfmt etc.
rather than blastn -task megablast. -db... -query -outfmt etc. (default)