Open mshakya opened 6 years ago
As per the request of Shawn, create a summary table that has number/percentage or reads mapped correctly, multiple times, and not mapped.
I can use a simple shell script that parses the mapping.log file. And, then compile their results to one final table.
mapping.log
find . -iname "mapping.log" -exec grep ") aligned concordantly 0 times" /dev/null {} \; | sed 's/aligned concordantly 0 times//g' | sed 's/\/mapping_results\/mapping\.log//g' | sed 's/\.\///g' | sed 's/:/,/g'
As per the request of Shawn, create a summary table that has number/percentage or reads mapped correctly, multiple times, and not mapped.
I can use a simple shell script that parses the
mapping.logfile. And, then compile their results to one final table.