Does PyPiRet accept unpaired illumina data ?

mshakya / piret

Pythonic PiReT

BSD 3-Clause "New" or "Revised" License

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Does PyPiRet accept unpaired illumina data ? #2

Open cromozome opened 6 years ago

cromozome commented 6 years ago

Hello I am just starting to experiment with the PyPiRet tools (at CDC). Does the pipeline work with single ended/unpaired illumina data ?

mshakya commented 6 years ago

Hi @cromozome,

Thanks for trying out PyPiReT. Right now, it doesn't work with single ended/unpaired illumina data. However, I do plan to implement that in near future. I can probably do it by the end of next week.

Also, please let me know how did the test go, the project is still in development, so any input would be greatly appreciated.

Thank you

Migun

cromozome commented 6 years ago

@mshakya Thanks Migun! Great to hear that you will be supporting non-paired reads as well. I tired to install using the INSTALL.sh and currently it fails at HISAT installation. I was installing on a CentOS ver 7.0 Linux machine

mshakya commented 6 years ago

Hi @cromozome,

I fixed the installation issue, there were problems with the versions as always. Please try again and let me know.

Thanks

Migun

cromozome commented 6 years ago

Thanks @mshakya