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msk-access / postprocessing_variant_calls

This repository helps with processing for variant calls made by a given caller
https://cmo-ci.gitbook.io/postprocessing_variant_calls
MIT License
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Sorting tool for tabix #50

Open buehlere opened 1 month ago

buehlere commented 1 month ago

add class function called def sort so vardict filter_single and vardict case_control return vcfs sorted on chromosome and position. Sort should be called for the command here.

rhshah commented 1 month ago

Just fyi, sort should be called after the closing of file handle.