Final json to TSV converter for the neoantigen pipeline.
[x] This comment contains a description of changes (with reason).
[x] If you've fixed a bug or added code that should be tested, add tests!
[x] If you've added a new tool - have you followed the module conventions in the contribution docs
[x] If necessary, include test data in your PR.
[x] Remove all TODO statements.
[x] Emit the versions.yml file.
[x] Follow the naming conventions.
[x] Follow the parameters requirements.
[x] Follow the input/output options guidelines.
[x] Add a resource label
[x] Use BioConda and BioContainers if possible to fulfil software requirements.
Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
nikhil
commented
2 months ago
Final json to TSV converter for the neoantigen pipeline.
[x] This comment contains a description of changes (with reason).
[x] If you've fixed a bug or added code that should be tested, add tests!
[x] If you've added a new tool - have you followed the module conventions in the contribution docs
[x] If necessary, include test data in your PR.
[x] Remove all TODO statements.
[x] Emit the versions.yml file.
[x] Follow the naming conventions.
[x] Follow the parameters requirements.
[x] Follow the input/output options guidelines.
[x] Add a resource label
[x] Use BioConda and BioContainers if possible to fulfil software requirements. Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
[x] PROFILE=docker pytest --tag --symlink --keep-workflow-wd --git-aware
[x] PROFILE=singularity pytest --tag --symlink --keep-workflow-wd --git-aware