Release/0.1.1 - Githubissues

mskcc-omics-workflows / modules

A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

https://mskcc-omics-workflows.gitbook.io/omics-workflows

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Release/0.1.1 #130

Closed buehlere closed 2 months ago

buehlere commented 2 months ago

PR for release/0.1.1

editor config fix
add README
modules added:
- phylowgs/createinput
- phylowgs/parsecnvs
- phylowgs/multievolve
- phylowgs/writeresults
- netmhcpan
- neoantigeninput
- neoantigenediting/aligntoIEDB
- neoantigenediting/computeFitness
- netmhcstabpan
- ppflagfixer
- neoantigenutils/generatemutfasta
- neoantigenutils/formatnetmhcpan
- neoantigenutils/generatehlastring
- neoantigenutils/neoantigeninput
- salmon/index
- genomenexus/vcf2maf
- genomenexus/annotationpipeline
- ppflagfixer
- pvmaf/tagtraceback
- pvmaf/concat
- genotypevariants/all
- salmon/index
- salmon/quant
- rediscoverte
subworkflows added:
- subworkflows/phylowgs
- subworkflows/genome_nexus
- subworkflows/neoantigen_editing
- subworkflows/netmhcstabandpan
- subworkflows/traceback