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mskcc / LimsRest

the restful service used by the IGO LIMS
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08039_BZ_8 tissueLocation field contains value with newline character #137

Closed allanbolipata closed 4 years ago

allanbolipata commented 4 years ago

For 08039_BZ_8, one of the fields contain a string value that has a newline character in it.

"tissueLocation": "Lung/Middle\n  Lobe",

This is breaking some of our downstream processes. I don't think that's a valid entry and IGO might be interested in correcting this, although we will correct it on our end so we're not blocked.

allanbolipata commented 4 years ago

Also seen with 08039_BZ_11:

"tissueLocation": "left\n  retroperitoneum",
timosong commented 4 years ago

09459_I has issues with samples containing new line characters in tissueLocation

dmcmanam commented 4 years ago

I removed the spaces for samples noted above.

allanbolipata commented 4 years ago

@dmcmanam Thanks! Will re-import on our end.