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mskcc / neoantigen-pipeline

Pipeline for computing neoantigen qualities from DNA and RNA-Seq data
MIT License
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Nextflow module for phylo_wgs parse_cnvs #11

Closed nikhil closed 6 months ago

nikhil commented 6 months ago

Dockerhub Container: mskcc/phylowgs:v1.3-msk command: python2 /usr/bin/parser/parse_cnvs.py -c 0 -f facets [facets_gene_level_txt] output: cnvs.txt

pintoa1-mskcc commented 6 months ago

https://github.com/mskcc-omics-workflows/modules/tree/feature/neoantigen_parse_cnvs

This completes this issue.