Fixes to refalign workflow; add vcf2vcf to setup

mskcc / cmo

Command-line tools for data analysts at the CMO

GNU General Public License v2.0

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Fixes to refalign workflow; add vcf2vcf to setup #30

Closed ckandoth closed 7 years ago

ckandoth commented 7 years ago

These are mostly edits made during the course of running cmoflow_reference_alignment on giant WGS FASTQs. Needed a PiPiper to ensure these edits won't break something for the CWL pipes.

mskbot commented 7 years ago

Is this pending for a bending?

lordzappo commented 7 years ago

yeah, he's cool