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mskcc / cwl-commandlinetools

Central location for CWL CommandLineTools
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Containerize and write CWL for Waltz #18

Closed rhshah closed 5 years ago

rhshah commented 5 years ago

Tool: Waltz Location: https://github.com/juberpatel/Waltz Version: 2.0

shalabhsuman commented 5 years ago

I can take the Assignment for the issue.

shalabhsuman commented 5 years ago

As per discussion with the group, the current Docker image will be built based off the Waltz v2.0 jar. However once @juberpatel confirms the code clean up and version-control for Waltz, I will re-build the image, if needed.

shalabhsuman commented 5 years ago

While performing the test for this CMDLine tool, there is an error Error: Could not find or load main class org.mskcc.juber.waltz.countreads.CountReads. The base image for the image is Java:8. and the specific version while running the image is openjdk version "1.8.0_111". I am assuming the error may be caused by incompatibility between this Java version and Waltz-2.0.jar. Also, was able to replicate the same error with java version "1.7.0_75" .

@juberpatel - any idea if we need a specific version of Java to run Waltz?