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Central location for CWL CommandLineTools
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Figuring out the NEW/updated parameters options for GATK4 ApplyBQSR (called PrintReads in GATK3) #27

Closed shalabhsuman closed 5 years ago

shalabhsuman commented 5 years ago

There is no option for --baq inside the GATK4 ApplyBQSR. There may be a comparable parameter available and let's discuss it. @rhshah & @ionox0