Collapsing FirstPass CWL

mskcc / cwl-commandlinetools

Central location for CWL CommandLineTools

Other

3 stars 3 forks source link

Collapsing FirstPass CWL #39

Closed rhshah closed 5 years ago

rhshah commented 5 years ago

java -server -Xms8g -Xmx8g -cp Marianas.jar org.mskcc.marianas.umi.duplex.DuplexUMIBamToCollapsedFastqFirstPass bam-file pileup-file minMappingQuality minBaseQuality UMIMismatches UMIWobble minConsensusPercent reference-fasta-file

ionox0 commented 5 years ago

we can probably close this now that collapsing cwls are merged