bedtools genomecov

[rhshah]

version: 2.28

location: https://github.com/arq5x/bedtools2/releases/download/v2.28.0/bedtools

• [x] CWL
• [x] Container
• [x] Test

bedtools genomecov -bg -ibam /path/to/bam > out.bedgraph

You can use these as the starting points: https://github.com/common-workflow-language/workflows/blob/master/tools/bedtools-genomecov.cwl

[shalabhsuman]

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