Closed rhshah closed 5 years ago
version: 2.28
location: https://github.com/arq5x/bedtools2/releases/download/v2.28.0/bedtools
bedtools genomecov -bg -ibam /path/to/bam > out.bedgraph
You can use these as the starting points: https://github.com/common-workflow-language/workflows/blob/master/tools/bedtools-genomecov.cwl
version: 2.28
location: https://github.com/arq5x/bedtools2/releases/download/v2.28.0/bedtools
bedtools genomecov -bg -ibam /path/to/bam > out.bedgraph
You can use these as the starting points: https://github.com/common-workflow-language/workflows/blob/master/tools/bedtools-genomecov.cwl