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mskcc / cwl-commandlinetools

Central location for CWL CommandLineTools
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Release/0.2.0 #53

Closed allanbolipata closed 5 years ago

allanbolipata commented 5 years ago

Added the following files:

abra2_2.17/README.md
abra2_2.17/abra2_2.17.cwl
abra2_2.17/container/Dockerfile
abra2_2.17/example_inputs.yaml
abra2_2.19/README.md
abra2_2.19/abra2_2.19.cwl
abra2_2.19/container/Dockerfile
abra2_2.19/example_inputs.yaml
bedtools_genomecov_v2.28.0_cv2/bedtools_genomecov.cwl
bedtools_genomecov_v2.28.0_cv2/example_inputs.yml
bedtools_merge_v2.28.0_cv2/bedtools_merge.cwl
bedtools_merge_v2.28.0_cv2/example_inputs.yml
gatk_ApplyBQSR_4.1.2.0/example_inputs.yml
gatk_ApplyBQSR_4.1.2.0/gatk_ApplyBQSR.cwl
gatk_BaseRecalibrator_4.1.2.0/example_inputs.yml
gatk_BaseRecalibrator_4.1.2.0/gatk_baserecalibrator.cwl
marianas_collapsing_first_pass_1.8.1/marianas_first_pass.cwl
marianas_collapsing_first_pass_1.8.1/test_inputs_first_pass.yaml
marianas_collapsing_second_pass_1.8.1/marianas_second_pass.cwl
marianas_collapsing_second_pass_1.8.1/test_inputs_second_pass.yaml
marianas_process_loop_umi_1.8.1/container/Dockerfile
marianas_process_loop_umi_1.8.1/marianas_process_loop_umi.cwl
utilities_ubuntu_18.04/README.md
utilities_ubuntu_18.04/example_inputs_gzip.yaml
utilities_ubuntu_18.04/example_inputs_sort.yaml
utilities_ubuntu_18.04/gzip.cwl
utilities_ubuntu_18.04/sort.cwl
waltz_count_reads_3.1.1/container/Dockerfile
waltz_count_reads_3.1.1/example_inputs.yml
waltz_count_reads_3.1.1/waltz_count_reads_3.1.1.cwl
waltz_pileupmatrices_3.1.1/example_inputs.yml
waltz_pileupmatrices_3.1.1/waltz_pileupmatrices_3.1.1.cwl