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mskcc / facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
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Error in installation of facets #131

Open wangxlab opened 5 years ago

wangxlab commented 5 years ago

Hi,

I tried to install facets through 'install_github' but I got error. I already installed 'pctGCdata' in case, but still it doesn't work. The error message is below.

library(pctGCdata) install_github("mskcc/facets") Error: Could not find tools necessary to compile a package

I installed pctGCdata was through github, so I am sure devtools is not a problem. And, as I am using PSC (Pittsburgh Supercomputing Center) Bridges, I think the computer environment is not a problem either. The R version I used is 3.6.0. How can I solve this problem?

Thank you, Sanghoon

veseshan commented 5 years ago

Unlike pctGCdata, facets has fortran and C code that need to be compiled. The error message says that it "could not find tools necessary to compile" So please check your environment.