I wonder if anyone can share your experience with Facets analysis result on FFPE samples. Specifically, I am curious if FFPE preservation can lead to potential noises(e.g., potential false amplifications/deletions) in the result.
Meanwhile, I wonder if there are parameters in the BAM preprocess or normalization steps that we can fine tune to tackle FFPE's impact.
Hi all,
I wonder if anyone can share your experience with Facets analysis result on FFPE samples. Specifically, I am curious if FFPE preservation can lead to potential noises(e.g., potential false amplifications/deletions) in the result.
Meanwhile, I wonder if there are parameters in the BAM preprocess or normalization steps that we can fine tune to tackle FFPE's impact.
Thank you all.