snp_pileup returning no calls.

mskcc / facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

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snp_pileup returning no calls. #196

Open apallav21 opened 5 months ago

apallav21 commented 5 months ago

Hi,

my snp_pileup output is coming out blank. I am wondering if it has something to do with "car" in my bam files. I did supply dbSNP vcf file with car in the config names. Please advise.

Aparna