mskcc / facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
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Incorrect plots with purity=NA #199

Closed karolina16 closed 1 week ago

karolina16 commented 1 week ago

Hello, I am getting these incorrect plots with very low ploidy (top plot) and missing tumor purity from mice samples (bottom plot). Also, the middle panels do not correspond to the changes in the top panel.

Would greatly appreciate any feedback how to fix this. Many thanks, Karolina cnv_facets_new.cnv_issue-1.pdf