mm39 in the preProcSample {facets}

mskcc / facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

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Open karolina16 opened 5 months ago

karolina16 commented 5 months ago

Hello,

Would it be possible to include the mm39 genome in the preProcSample in the R facets?

Thanks in advance, Karolina

veseshan commented 5 months ago

Hi Karolina,

The function has a "udef" option for gbuild. You can process mm39 for GC content and pass it on. I will look into adding it.

Thanks, Venkat