Open solivehong opened 6 years ago
Your sample seems to have hardly any het SNPs. The numbers in the nhet column above are zero or 1. In a typical WES sample one would expect 8-10% hets. This could either be due to the way the panel was designed or you have genome build mismatch in the analysis.
This could either be due to the way the panel was designed so have you tested any panel data, what is "the way" you refer to, thanks a lot.
hi I used this software to analyze my own tumor samples,Bam from ffpe sample for lung cancer panal detection
Is there a problem with my sample or with my parameter settings? I'm a biological beginner who wants to answer a detailed point.